PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19032
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WRKY
Protein Properties Length: 165aa    MW: 17926.7 Da    PI: 9.5958
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19032genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.14.9e-2587137251
               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEE CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveit 51 
               +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++t
  EMT19032  87 SDGCQWRKYGQKMAKGTPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITT 137
               7***************************99***************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.760.108.8E-4267IPR009056Cytochrome c-like domain
Gene3DG3DSA:2.20.25.801.6E-2771137IPR003657WRKY domain
SuperFamilySSF1182902.09E-2279137IPR003657WRKY domain
PROSITE profilePS5081123.06681139IPR003657WRKY domain
SMARTSM007746.4E-2586140IPR003657WRKY domain
PfamPF031069.0E-2288137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0009055Molecular Functionelectron carrier activity
GO:0020037Molecular Functionheme binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDCAGCHGIV GAGKAELMPL PSFEHHGHHE RGGSPEAMQG WLPSKVPKFL PAAKGPEPPP  60
PEAAAAAATM RKARVSVRAR SEAAMISDGC QWRKYGQKMA KGTPCPRAYY RCTMAAGCPV  120
RKQVQRCAED RTVLITTLST GTELNTISTE KQRFHGPPDV YIKIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-1873138165WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0857526e-52BT085752.2 Zea mays full-length cDNA clone ZM_BFc0057C03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963595.11e-56PREDICTED: probable WRKY transcription factor 42
SwissprotQ9XEC31e-43WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLR7W9U11e-120R7W9U1_AEGTA; Putative WRKY transcription factor 42
STRINGSi024078m4e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-33WRKY family protein